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Vegan Dark Chocolate-Gingerbread Thumbprint Cookies Recipe

I absolutely love this Vegan Dark Chocolate-Gingerbread Thumbprint Cookies Recipe because it blends the warm, comforting spices of gingerbread with the richness of dark chocolate in such a delightful, approachable way. Whether you’re baking for the holidays, a cozy afternoon treat, or to impress your friends, these cookies always hit the spot with their chewy texture and that perfect balance of sweet and spicy.

When I first tried this recipe, what blew me away was the combo of homemade candied ginger tucked right into the chocolate ganache center. It adds a zesty pop that makes each bite memorable. You’ll find that once you give this recipe a go, it’ll become your go-to for festive gatherings or any time you want a cookie that’s a little extra special but still easy enough to make at home.

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Why You’ll Love This Recipe

  • Rich and Spiced Flavor: The blend of cinnamon, ginger, nutmeg, and cloves delivers a classic gingerbread taste with a cozy warmth in every bite.
  • Perfect Texture: Chewy oat and almond flours combine to give you a tender cookie that’s never dry or crumbly.
  • Decadent Ganache Center: The dark chocolate coconut cream ganache is smooth and luscious, adding a luxurious touch to each thumbprint.
  • Made-from-Scratch Candied Ginger: Homemade candied ginger brings a fresh zing and a little extra sweetness that your taste buds will thank you for.

Ingredients You’ll Need

This Vegan Dark Chocolate-Gingerbread Thumbprint Cookies Recipe uses wholesome, pantry-friendly ingredients that come together beautifully to create those signature gingerbread flavors. I always recommend getting good quality dark chocolate and fresh spices for the best results.

  • Candied Ginger: Fresh ginger sliced thin makes a world of difference—buy young, firm ginger for tender coins.
  • Coconut Sugar: This adds a gentle caramel note, and using a finer grind helps the cookies hold together nicely.
  • Oat Flour: I prefer store-bought for consistency, but you can blitz oats yourself if you’re in a pinch.
  • Almond Flour: Adds moisture and a subtle nutty flavor that complements the spices perfectly.
  • Baking Powder: Key for a little lift—don’t skip or substitute unless you know the science behind it.
  • Spices (Cinnamon, Ginger, Nutmeg, Cloves): Use freshly ground if possible; it really amps up the aroma and flavor.
  • Kosher Salt: Balances sweetness and intensifies the chocolate notes.
  • Refined Coconut Oil: Melted and neutral, it helps create that chewy but tender cookie texture.
  • Blackstrap Molasses: This is the soul of gingerbread flavor—don’t substitute unless you want a very different cookie.
  • Dark Chocolate: I use Hu Simple Dark Chocolate for its clean ingredient list, but feel free to pick any good-quality vegan dark chocolate.
  • Unsweetened Coconut Cream: The secret to that silky ganache that holds the chocolate filling together, plus it keeps everything dairy-free.
Note: You’ll find the complete list of ingredients, along with their exact measurements, in the printable recipe card at the bottom of this post.

Variations

I love making this Vegan Dark Chocolate-Gingerbread Thumbprint Cookies Recipe my own by switching up a few elements depending on the season or my mood. Don’t be shy about experimenting—these cookies are forgiving and versatile!

  • Spice it Up: Sometimes I add a pinch of cardamom or black pepper for an extra warming kick that surprises everyone.
  • Nut-Free Version: Swap almond flour for more oat flour or a seed flour like sunflower seed flour to keep it safe and just as tasty.
  • Fruit Jam Filling: Instead of chocolate ganache, I’ve filled the thumbprints with tart cherry or raspberry jam for a bright contrast.
  • Holiday Twist: Add orange zest to the dough for a festive citrus note that pairs amazingly with ginger and molasses.

How to Make Vegan Dark Chocolate-Gingerbread Thumbprint Cookies Recipe

Step 1: Make the Candied Ginger that Steals the Show

This part might seem a little involved, but it’s worth every minute. Start by dissolving coconut sugar in water over medium-low heat, stirring regularly to avoid burning. When the syrup is ready, add the sliced ginger coins and simmer until the liquid thickens into a syrup—about 30-35 minutes. I’ve found keeping an eye on it and stirring often prevents sticking or scorching. Once done, drain and toss the ginger pieces in a bit more coconut sugar, then pop them in the fridge to dry while you move on to the cookie dough. Pro tip: Save the leftover syrup—it’s incredible stirred into tea or cocktails!

Step 2: Prepare Your Cookie Dough With Love

Preheat your oven to 350°F and line two baking sheets with parchment paper—this step saves a ton of clean-up later. Combine oat flour, almond flour, coconut sugar, baking powder, and all those lovely warm spices in a large bowl and whisk until mixed well. Then, add melted coconut oil and blackstrap molasses. Here’s where I get my hands in—the dough feels sticky and moist, perfect for shaping. Mixing with hands helps me know when it’s just right without overworking it.

Step 3: Shape the Cookie Bases and Create Those Thumbprints

Divide your dough into 14 equal balls and space them out evenly on your baking sheets. Press your thumb deep into each ball to create a well for the filling—but be gentle! If cracks appear, I pinch the edges together to keep the filling from spilling out during baking. I always chill the trays in the freezer for 15 minutes before baking; it helps cookies keep their shape and prevents spreading. Bake for about 14 minutes, but check at 10—sometimes the indentations start to disappear, and a quick press with a teaspoon revives them perfectly. Once out of the oven, press the indentations one more time while still warm.

Step 4: Whip up the Silky Dark Chocolate Ganache

While the cookies cool, gently heat the coconut cream until it just barely simmers around the edges—don’t let it boil! Then stir in the chopped dark chocolate until smooth and glossy. I like to do this off the heat to keep the ganache silky instead of gritty. Spoon the ganache carefully into each thumbprint, then top with a candied ginger coin for that irresistible zing. Let them set at room temp, or pop the tray into the fridge if you’re impatient like me!

Step 5: Storing Your Delicious Creations

Once these Vegan Dark Chocolate-Gingerbread Thumbprint Cookies have cooled completely, store them in a covered container in the fridge for 2 to 3 days. They keep their freshness surprisingly well and the flavors even deepen overnight!

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Pro Tips for Making Vegan Dark Chocolate-Gingerbread Thumbprint Cookies Recipe

  • Chill the Dough: Freezing the cookie sheets before baking is a game-changer—it keeps your thumbprints intact and prevents spreading.
  • Fresh Spices Matter: I learned that using fresh ground spices makes the gingerbread flavor pop far more than pre-ground ones.
  • Don’t Skip the Pressing: If your thumbprint starts closing up, press it back in quickly for a lovely well to hold your ganache.
  • Use Refined Coconut Oil: Unlike virgin coconut oil, refined coconut oil won’t add unwanted coconut flavor—this keeps the gingerbread spices front and center.

How to Serve Vegan Dark Chocolate-Gingerbread Thumbprint Cookies Recipe

A stack of four round, thick cookies sits on a white plate with a thin gold rim on a white marbled surface. The top cookie has a bite taken out, revealing a soft, dark chocolate inside. Each cookie has a deep brown color with a slightly cracked surface and a few lines of melted chocolate drizzled on top. There are small flakes of white salt sprinkled over the stack. In the background, more cookies are scattered out of focus. Photo taken with an iphone --ar 4:5 --v 7

Garnishes

I usually keep it simple and elegant by topping each cookie with a single piece of candied ginger, but for parties, I like to dust them lightly with a bit of powdered sugar or drizzle some melted vegan white chocolate for contrast. A sprinkle of flaky sea salt on the dark chocolate ganache can also elevate the flavors beautifully.

Side Dishes

These cookies pair wonderfully with a warm mug of spiced chai, vegan hot chocolate, or even a cup of black tea with lemon. For a festive touch, I often serve them alongside vegan eggnog or mulled wine to turn snack time into a full celebration.

Creative Ways to Present

For special occasions, I love arranging these cookies on a pretty platter lined with pine branches and cranberries, making them look like edible holiday ornaments. Wrapping a few up in parchment and tying with twine makes for a charming gift that anyone would treasure. If you’re baking with kids, let them decorate the tops with extra candied ginger or vegan sprinkles before the ganache sets—it’s so much fun to get creative together!

Make Ahead and Storage

Storing Leftovers

I store leftover Vegan Dark Chocolate-Gingerbread Thumbprint Cookies in an airtight container in the fridge to keep them fresh for a couple of days. I’ve found that the flavors actually deepen a bit overnight, making the next day’s treat even better. Just let them come to room temperature before digging in for the best texture.

Freezing

If you need to prep ahead, these cookies freeze wonderfully—candied ginger and all! After baking and filling with ganache, I freeze them on a tray first, then transfer them to a freezer-safe container. When you’re ready to enjoy, just thaw them in the fridge overnight and bring to room temp before serving.

Reheating

To refresh your cookies, pop them in a warm oven (about 300°F) for 3-5 minutes. It helps soften the cookie and re-melts the ganache slightly for that freshly baked experience. Just don’t overheat or the chocolate might lose its silky texture.

FAQs

  1. Can I make this Vegan Dark Chocolate-Gingerbread Thumbprint Cookies Recipe gluten-free?

    Yes! Since this recipe uses oat flour and almond flour, it’s naturally gluten-free as long as you use certified gluten-free oats. Just double-check your baking powder and other ingredients to ensure they’re gluten-free as well.

  2. Can I substitute the molasses in this recipe?

    Molasses is key for that deep gingerbread flavor, but if you don’t have blackstrap molasses, you can try regular unsulfured molasses, though the flavor might be a bit sweeter and less robust. Avoid substituting with syrup or honey if you want to keep it vegan and authentic.

  3. How long do these cookies keep fresh?

    Stored in an airtight container in the fridge, they stay fresh and delicious for up to 3 days. I recommend letting them sit at room temperature 10-15 minutes before serving for the best texture and flavor.

  4. Can I skip making the candied ginger?

    You can use store-bought candied ginger to save time, but homemade really amps up the fresh ginger flavor and sweetness without being overly sugary. If you’re short on time, I suggest at least chopping the store-bought version into smaller pieces for easier bites.

  5. Is the dark chocolate ganache suitable for kids?

    Yes, this ganache is dairy-free and smooth, perfect for kids who enjoy chocolate. Just choose a milder dark chocolate with lower cacao content if your little ones prefer less bitterness.

Final Thoughts

This Vegan Dark Chocolate-Gingerbread Thumbprint Cookies Recipe has been a game-changer in my cookie rotation. I love how approachable it is, yet how deeply satisfying every bite feels—like a warm hug in cookie form. If you’re looking to impress family or bring a little festive magic to your kitchen any time of year, don’t hesitate to try it. You’ll be amazed how the homemade candied ginger paired with rich dark chocolate makes these cookies unforgettable. Trust me, once you bake this recipe, it’ll quickly become a beloved tradition you’ll want to share.

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Vegan Dark Chocolate-Gingerbread Thumbprint Cookies Recipe

5 Stars 4 Stars 3 Stars 2 Stars 1 Star 4.4 from 70 reviews
  • Author: Sophia
  • Prep Time: 30 Minutes
  • Cook Time: 20 Minutes (candied ginger simmer + baking time combined approx. 20-25 minutes active baking; overall simmer 35 min plus baking 14 min considered cook time)
  • Total Time: 1 Hour 25 Minutes
  • Yield: 14 large cookies
  • Category: Dessert
  • Method: Baking
  • Cuisine: Vegan, American Holiday
  • Diet: Vegan

Description

These Vegan Dark Chocolate-Gingerbread Thumbprint Cookies are a festive treat combining warm spices, chewy candied ginger, and rich dark chocolate ganache. Perfectly soft yet slightly crisp, these cookies capture the essence of gingerbread with a vegan twist, using oat and almond flours, coconut sugar, and molasses. The thumbprint centers filled with homemade dark chocolate ganache topped with candied ginger make them an irresistible holiday cookie that’s both comforting and indulgent.


Ingredients

Candied Ginger

  • 1 cup coconut sugar, plus 3 tablespoons for coating
  • 2 cups water
  • 1 3-inch piece of fresh ginger, peeled and sliced into 1/8-inch thick coins

Cookies & Chocolate Ganache

  • 1 1/2 cups oat flour (180 grams; store-bought recommended)
  • 1/2 cup superfine almond flour (68 grams)
  • 1/2 cup coconut sugar (72 grams)
  • 1 teaspoon baking powder (4 grams)
  • 2 teaspoons ground cinnamon (6 grams)
  • 1 tablespoon ground ginger (7 grams)
  • 1/4 teaspoon ground nutmeg (1 gram)
  • 1/4 teaspoon ground cloves (1 gram)
  • 3/4 teaspoon kosher salt (3 grams)
  • 7 tablespoons refined coconut oil, melted (77 grams)
  • 6 tablespoons blackstrap molasses (132 grams)
  • 4.2 ounces (2 bars) Hu Simple Dark Chocolate, roughly chopped into shards
  • 3 tablespoons unsweetened coconut cream


Instructions

  1. Make the Candied Ginger: In a small saucepan, combine 1 cup of coconut sugar with 2 cups of water and heat over medium-low flame. Stir every minute until sugar dissolves. Add ginger coins and simmer gently for 30-35 minutes until the liquid thickens into a syrup. Drain ginger, toss with 3 tablespoons coconut sugar, and refrigerate to cool and dry. Reserve syrup for cocktails if desired.
  2. Prepare Oven and Baking Sheets: Preheat the oven to 350°F (177°C). Line two baking sheets with parchment paper to prevent sticking.
  3. Make the Dough: In a large bowl, whisk together oat flour, almond flour, coconut sugar, baking powder, cinnamon, ginger, nutmeg, cloves, and salt. Add melted coconut oil and molasses. Mix with a wooden spoon or your hands until a moist dough ball forms.
  4. Shape the Cookies: Divide dough into 14 equal pieces and roll into balls. Place evenly on prepared sheets. Use your thumb to press a deep indentation in each, almost to the pan but leaving the edges intact. If cracks appear, pinch the dough to form a retaining wall. Chill the cookie trays in the freezer for 15 minutes.
  5. Bake the Cookies: Bake for 14 minutes, checking at 10 minutes to ensure indentations remain deep. Press them again with a teaspoon if they are filling in. After baking, press the centers one last time while the cookies cool on the trays.
  6. Make the Chocolate Ganache: Heat coconut cream in a small saucepan until just simmering around edges. Remove from heat, add chopped chocolate, and stir until melted and smooth. Spoon ganache into cookie indentations.
  7. Assemble and Chill: Top each ganache-filled cookie with one piece of candied ginger. Let cookies sit at room temperature until chocolate sets, or chill in refrigerator for 20 minutes for faster setting.
  8. Store the Cookies: Keep in a covered container in the fridge for 2 to 3 days to maintain freshness and set texture.

Notes

  • The candied ginger can be made several days in advance and stored refrigerated. Only 14 pieces are needed; extras are perfect for snacking.
  • Use store-bought oat flour for best texture; alternatively, make your own by finely grinding rolled oats.
  • Check the cookie indentations during baking to keep them deep enough for the ganache filling.
  • Refined coconut oil is preferred for neutral flavor and better texture, but unrefined can be used for a coconut taste.
  • These cookies can be refrigerated up to 3 days, but are best enjoyed within that timeframe for optimal freshness.
  • The syrup from candied ginger can be saved and added to cocktails or beverages for extra flavor.

Nutrition

  • Serving Size: 1 cookie
  • Calories: 180 kcal
  • Sugar: 12 g
  • Sodium: 105 mg
  • Fat: 9 g
  • Saturated Fat: 6 g
  • Unsaturated Fat: 3 g
  • Trans Fat: 0 g
  • Carbohydrates: 23 g
  • Fiber: 3 g
  • Protein: 2 g
  • Cholesterol: 0 mg

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